rs27288080 SNP Detail

Summary

• ID
  rs27288080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168511307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAACTA AATACTAAGG
  CCCAGCAAGA TGGCTCAGTG GGTCAAGGTG CTTGATTCCC CAGGACCTAC AGATAGCAGA
  GAACTGACTC CTGAAGGCTG TCCTCTGACC TCCACACGTG TGCCCTGGCA CATGTACACA
  CACACATGTA CACCACACAC AAATAGATAT TAACTCAGTG GCGTCAAGCA GCTCAGAGTC
  R
  CCATTCTGGA CAAAGGGTTG CCTGTAAGAG CTAAACGGGA AGCGAGAGAT GCTTATGGGG
  TCCCTGGATT CCTTGCTCCA CTAAAAGCAT GTGCACCCAG CAGGACAAAA GCCATGCAAG
  ACTTTACCTC GCATGATGCT TAACACACAT GACACACGGT TGGCCCAAAC CAAGAACAGA
  TGGCCTGGGA AACAAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37504216	NES08854192	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27288080					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504216	NES08854192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168511307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp9a	ATPase, class II, type 9A			Intron
				Noncoding-Transcript-Variant
Rr374244	regulatory region 374244			within coordinates
Rr571055	regulatory region 571055			6 bp proximal
Rr571056	regulatory region 571056			500 bp proximal
Rr571057	regulatory region 571057			712 bp proximal
Tssr21878	transcription start site region 21878			814 bp upstream
Tssr21879	transcription start site region 21879			1106 bp upstream
Tssr27856	transcription start site region 27856			665 bp downstream
Tssr27857	transcription start site region 27857			701 bp downstream
Tssr27858	transcription start site region 27858			1005 bp downstream