rs27283167 SNP Detail

Summary

• ID
  rs27283167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169201337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGGTAA CTCCTTTGTG
  TGACATAAGA TGGTTTACAA ACCATGTGCA TATTTCAGCT AAGAAATAGG AGTGATTGGC
  AAAGAGTGAG CAGGTGTTGA CTTCCCAAGG CCCAGAACTC CATGTCATTC CCCGTTCCAG
  CCAAGGGATG CATTTACTGA GCACCTCCAC GCTCAGCACC ATCAGGAAGG CTGTCTAGGT
  R
  GTGCTTCCAG TATCAAGAGA AAGCTTACTT CATTTTCCTG CTCACGGATA TCAAATTTTG
  AGAAAAATAT ATTCACTGGC TTGTGTATAT GCTTATATGT GTACTTTGGT GTTTTGTGTT
  TGTGGAGATG GAGTGACCCA AGACGGTCTC CAACTCGAGG TATAGACCAG GGTGGCTTTG
  CCTCTGGACC ACCATCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37501486	NES08836802	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	G	G		G	G	G	G		G
ss148282899	ENSMUSSNP3099869	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320612356	CHEV_2_169184917	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27283167					SNP	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37501486	NES08836802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169201337 () rs orientation: forward

Symbol	Name	Function Class
Gm75475	predicted gene, 75475	within coordinates
Rr571188	regulatory region 571188	1625 bp distal
Rr571189	regulatory region 571189	897 bp proximal
Rr571190	regulatory region 571190	1045 bp proximal