rs27283165 SNP Detail

Summary

• ID
  rs27283165
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169201592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGAGAA AAATATATTC
  ACTGGCTTGT GTATATGCTT ATATGTGTAC TTTGGTGTTT TGTGTTTGTG GAGATGGAGT
  GACCCAAGAC GGTCTCCAAC TCGAGGTATA GACCAGGGTG GCTTTGCCTC TGGACCACCA
  TCCACATCTT AGGAGTTGAA TATTGAGATT ACAGATATCA CCATACTGTT TTGTTTATTT
  W
  TTGCTACATG AGATGCCCAC TGTTGAGTGC TGATAGACAG ACAGGCCCCC CTTTGGGGGG
  AATTTACAGT TTAGAAGGAC AGCCATGCAT AAAGAGAAAA ATCTAGAGTG CCGCCGACAA
  GTAGCCAGTG TTGAAGCTGA GAACCCTAAC TGTTCCCTAG TCAACAACCA GGAGTCACCG
  TCTCTGGAAT GATAATTTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37501484	NES08836753	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27283165					SNP	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37501484	NES08836753	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169201592 () rs orientation: forward

Symbol	Name	Function Class
Gm75475	predicted gene, 75475	within coordinates
Rr571188	regulatory region 571188	1880 bp distal
Rr571189	regulatory region 571189	642 bp proximal
Rr571190	regulatory region 571190	790 bp proximal