rs27283159 SNP Detail

Summary

• ID
  rs27283159
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169202023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCTTGA GAGACAGATG
  GAGCAAGGGA TGCTGGAGTA CTAGACAGTA GGAGAACCGG AAGAAGCCGG AACCGGGAGT
  GAGCATGTGG GAGGGGCTTA GCGGTACAGA GGCAAGTGAA ACAACAAACC TCCCACGATG
  CCATTTGCAT TAAGATCAAA TCTAAGAAAA ATAAAACAAT GTATGATTTC AAGTCGCATA
  M
  AGAAGGAATA AAACCACAGA GGAAAAGAAA AGAAGAGAAA AGAAAAGAGA AGAAAAGAAA
  AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA AGGAAAGGAA AGGAAAAGGC GGGATGTGAG
  AGACCAAAAA TTAGAGAGAG AGGAGAAAAT GTGAGCCCAT CCAAGTGGTC AAGTTAGTGG
  TAGGTTCACA GAGTGGCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37501478	NES08836764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27283159					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37501478	NES08836764	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169202023 () rs orientation: forward

Symbol	Name	Function Class
Gm75475	predicted gene, 75475	within coordinates
Rr571189	regulatory region 571189	211 bp proximal
Rr571190	regulatory region 571190	359 bp proximal