rs27281595 SNP Detail

Summary

• ID
  rs27281595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:137818074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACCATT GATAAAACAT
  GAGTGTGATA TATAGTGCTA AAAATGTTGT TTCCAGAAGT TAGAATCACC TAAGAGGTGG
  GCTTTTGGCA TGTCTGTGGG AGCTTATCTA AATTACTTTA ATTTAATTGG GAAACCACTT
  GTGGGTGGTA CCATGCCCTA GGCAAGGGAC CCTGGACTGT ATAAAAATAG AGAAAGCAAA
  Y
  TGAGTACTGT CAATATTTAC ATTTAATACT TTCTTATGAT ATGACCAGTT ACTCCAAGCT
  CCCAGTACCT TGACTCTTGC TGTTATAGTC TATAAACTGG AGCTGTAAGT TATAATAAAC
  ACTCATTCCT GTAAATGGCT TTGATAGAGA ACTTAATCAG ATGTTCTCAA ATATTACTGA
  GAGGTCATAG TAACTACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37445323	NES08964706	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27281595					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37445323	NES08964706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:137818074 () rs orientation: forward

Symbol	Name	Function Class
Rr565959	regulatory region 565959	1715 bp proximal
Rr565960	regulatory region 565960	1849 bp proximal