rs27281594 SNP Detail

Summary

• ID
  rs27281594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:137818125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAAGTT AGAATCACCT
  AAGAGGTGGG CTTTTGGCAT GTCTGTGGGA GCTTATCTAA ATTACTTTAA TTTAATTGGG
  AAACCACTTG TGGGTGGTAC CATGCCCTAG GCAAGGGACC CTGGACTGTA TAAAAATAGA
  GAAAGCAAAC TGAGTACTGT CAATATTTAC ATTTAATACT TTCTTATGAT ATGACCAGTT
  R
  CTCCAAGCTC CCAGTACCTT GACTCTTGCT GTTATAGTCT ATAAACTGGA GCTGTAAGTT
  ATAATAAACA CTCATTCCTG TAAATGGCTT TGATAGAGAA CTTAATCAGA TGTTCTCAAA
  TATTACTGAG AGGTCATAGT AACTACATAT GTTCATAAAA ACTAAGGAAA TTAGAAACCT
  GCAAGGCAAT GTTAAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37445322	NES08964707	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27281594					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37445322	NES08964707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:137818125 () rs orientation: forward

Symbol	Name	Function Class
Rr565959	regulatory region 565959	1664 bp proximal
Rr565960	regulatory region 565960	1798 bp proximal