rs27281584 SNP Detail

Summary

• ID
  rs27281584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:137819430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATTAG TGGTGACAAT
  TTATTATCTA CAGGATTAGG GAAGAACATA TTGCACATAT AAGCTACTCA GTATGGTAAT
  GCAGATGTAG AGAGAATGGT TGAATTGCCC TTAGAACAGT ATCCAAAGGA GGCAGCATTC
  ATCAATAATG TTAGAAGTCG GTATAAACTC TAAGACGGCA CTGACTAGAA GCCTACAGGG
  W
  GTGGTGATTG TCTCAGTCTT GTTCTGCTTA CGCGGTGTAT TCTTATTTGT AGAGAAACAG
  CTCTGCATCA TGGTCTTTAT ACTTTCGTAT ATGTACAATA AACATTACTT TAAATGTGTT
  TGTAAGTAAG TATGATAACA TATGTGTCTC TACCTGAAGG ATTAGGAAGG CTGTGACAGA
  GAACCATTAG TGTGAGATCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37445312	NES08964176	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27281584					SNP	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37445312	NES08964176	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:137819430 () rs orientation: forward

Symbol	Name	Function Class
Rr565959	regulatory region 565959	359 bp proximal
Rr565960	regulatory region 565960	493 bp proximal