rs27281583 SNP Detail

Summary

• ID
  rs27281583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:137819605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCACTGAC TAGAAGCCTA
  CAGGGAGTGG TGATTGTCTC AGTCTTGTTC TGCTTACGCG GTGTATTCTT ATTTGTAGAG
  AAACAGCTCT GCATCATGGT CTTTATACTT TCGTATATGT ACAATAAACA TTACTTTAAA
  TGTGTTTGTA AGTAAGTATG ATAACATATG TGTCTCTACC TGAAGGATTA GGAAGGCTGT
  R
  ACAGAGAACC ATTAGTGTGA GATCAGGCTG GGCTGGAAAG CAACACATTA TCTTAGAAAG
  CTAAAGATCA AAAGATTTCT GAGTTAAGTC AGATGAATTC AAGGGTTTCT GATAGCTATT
  ATAATCCTGA TCCTGAGATG TGGCTCAGAT GCCATCGTAT CTCTGTAGAG ATGGGGCTGA
  TGGCAGGTTT CAGTGTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37445311	NES08964177	PERLEGEN	MM_PANEL2	f	SNP	G		G	A		G
ss320522695	CHEV_2_137803421	CHEVERUD	SCREENING_POP	f	SNP		G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27281583					SNP	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37445311	NES08964177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:137819605 () rs orientation: forward

Symbol	Name	Function Class
Rr565959	regulatory region 565959	184 bp proximal
Rr565960	regulatory region 565960	318 bp proximal