rs27279934 SNP Detail

Summary

• ID
  rs27279934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143743628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGAAG TGATCAGTAA
  GACCCGGGAG GTTTAATCTT TGGTGCCTCA GGCACCTTCC TTTAAGTCCT GGGATCCTTA
  CATGTTTCAT GGTTCCCTTA CCTAGTTTGT TGTTGTTGGG TTGTTTGAAT CGTTTATTGA
  GTGCACTGTA AGGGCAGAAT GGGCTCACTA GCAAGTGGAG TACTGTCTGA TCTCACTATG
  Y
  GGCCTAGTGT GTCCTGGAAC TCACAGTCCT CCTCTCCTAC CTGTCCTGGC GAGGACATGG
  GTGTATGTCA TGCCATTACG CCAGGTTCTA AGAAATGTAT TATTTTATGT GTGTGGGAGT
  CTGTGTATGG AAGTCCCAGG ACAACTTTGT GGAGCTGTTT CTGTTAGGAA TTGAAATTAT
  GATGCAAATG CTTTTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37483183	NES08937187	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27279934					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483183	NES08937187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143743628 () rs orientation: forward

Symbol	Name	Function Class
Rr566330	regulatory region 566330	1493 bp distal
Rr566331	regulatory region 566331	336 bp distal
Rr566332	regulatory region 566332	1749 bp proximal