rs27279931 SNP Detail

Summary

• ID
  rs27279931
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143745019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGCAT GTGAGTGGTA
  TGTGTTAGTG GCTGTGTATG TGTATATATA CGTGCACATG TATGCACTTG GCATCCAGCT
  ATAAGGAACA CTGCTGACCA ACAAGGCAAT TCTGTTAATA AATCTATACA GAAGACAAGC
  CAACTGAAAA GCAGGTTCCA GACATTTGTT ACAATCTTCC TGAGTGTTTC ATCAGCCTTT
  M
  ACTGGGTGTA AAGTTTCCAT GTAATATTTT CTTTAGAAAA TACAGGCAGC TGATGGCATG
  ATAAACCAAA GCTCTTTTAT TACCAGGAAA AACTCAGGCC AGCAGGTGCT GGTCTGTAAG
  TCCAGATTTT TAGCTTCTCT GCAGTCCAGT TTCTTCCACA CCGAGAGAGT CAATGTTTTC
  AACAACAAGG AAAATATTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37483180	NES08937124	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27279931					SNP	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483180	NES08937124	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143745019 () rs orientation: forward

Symbol	Name	Function Class
Rr566331	regulatory region 566331	1727 bp distal
Rr566332	regulatory region 566332	358 bp proximal
Rr566333	regulatory region 566333	1973 bp proximal