rs27279930 SNP Detail

Summary

• ID
  rs27279930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143745136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGTAATA TTTTCTTTAG AAAATACAGG CAGCTGATGG
  CATGATAAAC CAAAGCTCTT TTATTACCAG GAAAAACTCA GGCCAGCAGG TGCTGGTCTG
  Y
  AAGTCCAGAT TTTTAGCTTC TCTGCAGTCC AGTTTCTTCC ACACCGAGAG AGTCAATGTT
  TTCAACAACA AGGAAAATAT TCTCTCCTCC CCATCCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37483179	NES08937125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C	T	C		C	T	C
ss45198185	mCV24514988	ABI	CRAMUS_MOUSE	f	SNP	T					T	C
ss147774462	ENSMUSSNP2779083	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C
ss320535020	CHEV_2_143728952	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27279930					SNP	T	T	T	C	T	T	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483179	NES08937125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143745136 () rs orientation: forward

Symbol	Name	Function Class
Rr566331	regulatory region 566331	1844 bp distal
Rr566332	regulatory region 566332	241 bp proximal
Rr566333	regulatory region 566333	1856 bp proximal