rs27279929 SNP Detail

Summary

• ID
  rs27279929
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143745181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACCAAAG CTCTTTTATT ACCAGGAAAA ACTCAGGCCA
  GCAGGTGCTG GTCTGTAAGT CCAGATTTTT AGCTTCTCTG CAGTCCAGTT TCTTCCACAC
  M
  GAGAGAGTCA ATGTTTTCAA CAACAAGGAA AATATTCTCT CCTCCCCATC CCTTTCTTGA
  AGGGAACATT TTTTATGTTC ATTCTCATTA ATTTTTATG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37483178	NES08937126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C		A	A	C	A		A	C	A	A
ss45333561	mCV24514989	ABI	CRAMUS_MOUSE	f	SNP	C					C		A
ss147774467	ENSMUSSNP98184	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							A
ss320535021	CHEV_2_143728997	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27279929					SNP	C	C	C	A	C	C	A	A	C	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483178	NES08937126	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143745181 () rs orientation: forward

Symbol	Name	Function Class
Rr566331	regulatory region 566331	1889 bp distal
Rr566332	regulatory region 566332	196 bp proximal
Rr566333	regulatory region 566333	1811 bp proximal