rs27279928 SNP Detail

Summary

• ID
  rs27279928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143745652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTCGGAG CCAATATTTA TCATTTTAGA AATTTCCATG
  AGTCATAAAT GAAACCTGCA CTCGCAGCAC CTTCTACGGA CGTCTCTTTC CTAGAGTTGT
  K
  AAAAACGAAA AGGAAGAAAC AGAGAGCCTA GAATCCAACA CTCAGCCTCT GTTGGAGCAC
  CCACACACTC CTGCCTGGAG GATCCATCTC TGAAGGGTCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss37483177	NES08937127	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs27279928					SNP	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483177	NES08937127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143745652 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	within coordinates
Rr566333	regulatory region 566333	1340 bp proximal