rs27279923 SNP Detail

Summary

• ID
  rs27279923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143746776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCAGCCC TTATCCAAAA ACGACCAACA TGCATACAGA
  CAAGCCGTTC AGTTCTACAT TCAGATATCT TAGATATGAG GTCTAATTTC TTGATAGGAG
  Y
  ATATCTGTGC TCTCTTCCTC CAAACTTCCA CCTCTCAGTG AACCTGGCAG CTGTCTCCTT
  TATATTCATT CACATTGGTC ACAGAGGCCA ACTCTATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37483172	NES08937092	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	C	T	C	T		T	C	C
ss147774522	ENSMUSSNP4417839	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320535034	CHEV_2_143730592	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27279923					SNP	C	T	T	T	C	T	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37483172	NES08937092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143746776 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	700 bp distal
Rr566333	regulatory region 566333	216 bp proximal