rs27278538 SNP Detail

Summary

• ID
  rs27278538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148217197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTAAGCT TAAGAAAATG AAGTATGTGG TGTAATATAT
  GCAAAGGTCC TGTGGTGGGA GAGGGCTGGC TTAGCTTGGC TAGGATATCA CTCAATTGTT
  Y
  GGGGAGCTTA GGATACAGTG ATCAAAGGTT CCAAAAGACA ACGCAGTGAA CAAGGTTGTG
  CGGGTCCAGG TAACAGAGCC TTGAGAGGCC CCACAGATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37492261	NES08936554	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T	C	C	T	C	C	C	T
ss147923761	ENSMUSSNP2225946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27278538					SNP	T	T	C	T	T	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37492261	NES08936554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148217197 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	1053 bp downstream
Rr566886	regulatory region 566886	1035 bp distal
Rr566887	regulatory region 566887	148 bp proximal
Rr566888	regulatory region 566888	233 bp proximal
Rr566889	regulatory region 566889	614 bp proximal