rs27278537 SNP Detail

Summary

• ID
  rs27278537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148217253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTGTAC AGCAACAGGA
  AATGGCAGTT GGAAGTAGCG TGTAGGTGTA AGCTTAAGAA AATGAAGTAT GTGGTGTAAT
  ATATGCAAAG GTCCTGTGGT GGGAGAGGGC TGGCTTAGCT TGGCTAGGAT ATCACTCAAT
  TGTTTGGGGA GCTTAGGATA CAGTGATCAA AGGTTCCAAA AGACAACGCA GTGAACAAGG
  Y
  TGTGCGGGTC CAGGTAACAG AGCCTTGAGA GGCCCCACAG ATTCTTGGCC CAATAGAGAG
  ACAAATAACA AATATCTTGT TTTCAGTCTT CAGTTTTAAG TTATCTGGAG TTAAGGCAAG
  TTCTTTCACC AGCAACAGAC AACTTTGAGA AGGTACCCTT CATGGGTCCT TGCCCACAGA
  CCACCAGGGG GCAGCACGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37492260	NES08936555	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27278537					SNP	T	C	T	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37492260	NES08936555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148217253 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	997 bp downstream
Rr566886	regulatory region 566886	1091 bp distal
Rr566887	regulatory region 566887	92 bp proximal
Rr566888	regulatory region 566888	177 bp proximal
Rr566889	regulatory region 566889	558 bp proximal