rs27278523 SNP Detail

Summary

• ID
  rs27278523
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTTTA CAATGTGGAG
  TATAGTCTCA GTAAGACTTC AGCATCCACA ACTGTAATTC CAGTGCAGGA ACTGGCATTG
  TGCTCTCAGA TGTCATTTTC CTTGTTCTCT GTGTATTGAG AATTTGCTAC TGTGTCCAGA
  GCAGGGGAGA AGTCAATCAC AGTCTTTGAA GAGTGCTAAT GTTCTTTGTT TTAAAATGAT
  M
  GTGATCTGGG GATGCTTGCC ACCCTCACAA CTGTGTGCAG CTCCGAGATC TGGCAGAGAG
  GTAGCAAGGC TTACACACAG AACCAGGACC CCGTTTTCCA AAATGTCTTC TCAGATTGTA
  CCTTTCAGTC ACTCTGAACT TTGGCATCTG GTTTTTCAAC CTAGGGAGAA AGCAAATCAT
  GACATGGAGT TTTATCCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37492246	NES08936493	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	C	A	C	A	C	C	C	A
ss147923846	ENSMUSSNP3069527	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27278523					SNP	A	C	A	A	C	A	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37492246	NES08936493	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218915 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	within coordinates
Rr566887	regulatory region 566887	888 bp distal
Rr566888	regulatory region 566888	1464 bp distal
Rr566889	regulatory region 566889	1083 bp distal