rs27275745 SNP Detail

Summary

• ID
  rs27275745
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130133259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGATTGGC AGGGATATAA ACAGCCTAGA ATAAGGCAGG
  TGTAGAGCTT GCCTTTGTTT CAGGCCAAAG ATTGGAAATG GGATCTTAGC TTTTTCATCA
  M
  AGGCTCCAAC ATCGTGACTC CCATTGTCTT ATTATGTAGG ACTGAATGAT TCAGCCGAGA
  CACCAGGCCA GGCCAGGATA GGAAAGATTC CCAGGCAAGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37472176	NES08983985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275745					SNP	A	A	A	A	A	C	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37472176	NES08983985	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130133259 () rs orientation: forward

Symbol	Name	Function Class
Gm74723	predicted gene, 74723	within coordinates
Gm74727	predicted gene, 74727	within coordinates
Rr373864	regulatory region 373864	1438 bp downstream
Rr565031	regulatory region 565031	1768 bp distal
Rr565032	regulatory region 565032	8 bp proximal
Rr565033	regulatory region 565033	315 bp proximal
Rr565034	regulatory region 565034	1956 bp proximal
Tssr652	transcription start site region 652	965 bp upstream