rs27272579 SNP Detail

Summary

• ID
  rs27272579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131591208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCGTGGT GATTTACTAA
  ATATGAAAAT AAAGCTGTTC CTTAAAGAAC CCCCAACTTT TCCATTCCAA TGCATTTTTA
  TCTAAATCTA GAGGATTCGC AGTGCTGGCA GTGGGCGGCA CTCACTCTTA CGTTAGCTGA
  GAACCGAAAT GCAGGTTCCC ATCACCAATC GGAGAATAAA ATTCTCTATT AGACTGTGGG
  K
  CACGTAGGTG AAAGAATGCT AATCACCAAA CACAGAATCA TAGGGACACT GTTGGTCACT
  AAGGGAGCCA GGCTCCCCAA GGCAGCTATG AGCTGAGCTC TCAGACTCCA GGTACAGTGA
  GGAAGGCTTA TTATAGATCA GTGGTTCTCA ACCTGGGATC AAATGACCCT TTCACTGGGA
  TGGCATATCA GATATCCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37468003	NES08991674	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27272579					SNP	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468003	NES08991674	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131591208 () rs orientation: forward

Symbol	Name	Function Class
Gm30986	predicted gene, 30986	within coordinates
Rr565305	regulatory region 565305	1342 bp distal
Rr565306	regulatory region 565306	910 bp proximal