rs27272577 SNP Detail

Summary

• ID
  rs27272577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131591297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGACTGTGG GGCACGTAGG TGAAAGAATG CTAATCACCA
  AACACAGAAT CATAGGGACA CTGTTGGTCA CTAAGGGAGC CAGGCTCCCC AAGGCAGCTA
  W
  GAGCTGAGCT CTCAGACTCC AGGTACAGTG AGGAAGGCTT ATTATAGATC AGTGGTTCTC
  AACCTGGGAT CAAATGACCC TTTCACTGGG ATGGCATAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37468001	NES08991678	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	A	A	T	T	T	T	T	T
ss147611504	ENSMUSSNP1931387	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27272577					SNP	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37468001	NES08991678	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131591297 () rs orientation: forward

Symbol	Name	Function Class
Gm30986	predicted gene, 30986	within coordinates
Rr565305	regulatory region 565305	1431 bp distal
Rr565306	regulatory region 565306	821 bp proximal