rs27272575 SNP Detail

Summary

• ID
  rs27272575
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131591345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAACCGA AATGCAGGTT
  CCCATCACCA ATCGGAGAAT AAAATTCTCT ATTAGACTGT GGGGCACGTA GGTGAAAGAA
  TGCTAATCAC CAAACACAGA ATCATAGGGA CACTGTTGGT CACTAAGGGA GCCAGGCTCC
  CCAAGGCAGC TATGAGCTGA GCTCTCAGAC TCCAGGTACA GTGAGGAAGG CTTATTATAG
  W
  TCAGTGGTTC TCAACCTGGG ATCAAATGAC CCTTTCACTG GGATGGCATA TCAGATATCC
  TGCACATCCA ATATTGAAAT ACAATTCATA ACCATAGCAA AATTGCAGTT ATAATGTTGC
  AACAAAAAAA TAAATAAATT TATGGCTGGT GGTCACCACA ACATGAGGAG CTCTACTAAA
  GGGTCACAGC ATTAAGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37467999	NES08991682	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	T		A	A	A	T		A	T	T	A		A
ss45369378	mCV24483689	ABI	CRAMUS_MOUSE	f	SNP		T	A					A
ss147611513	ENSMUSSNP2224929	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
ss320507638	CHEV_2_131575161	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27272575					SNP	T	T	A	T	A	T	T	A	A	A	A	T	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467999	NES08991682	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131591345 () rs orientation: forward

Symbol	Name	Function Class
Gm30986	predicted gene, 30986	within coordinates
Rr565305	regulatory region 565305	1479 bp distal
Rr565306	regulatory region 565306	773 bp proximal