rs27272570 SNP Detail

Summary

• ID
  rs27272570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131592359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCCAA CCCTGACAGA
  ATGGGTCAAA AAAGCTGTTC TCTCCCATGG CTTTCGACTT TGAGAGAAGT GACCCCCTAG
  CTTCAAGATG GTGCTTATAC AAATACGCAT GGTGAGCTTT TGATTAAGTA TCAAAACAAA
  GCAGTGGAAC TGCCAGAAAA ACTTCATCCA GCCTGAGGTG AAGTTGAGGG TTCTGGGGCC
  Y
  ATATGGAGGC TGTGAGGCAA ACATTCCTGA CACACAGTAA ATAATGAGGG GGCACGCAGA
  GCAGGGCCTG GGAAAGGAAA CTGACACATG ATAATAAAAC AGGGACTCTC AGACCAGACC
  CCCATCTTGT GATAGCTCCA GGGTCATCCA AGGGAGGCTG ATCGGTGTCC TATTTGAGAG
  AGCAGAGCTG TTAGCCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37467994	NES08991637	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C	T	T	T	C		T	T	C	T		T
ss147611537	ENSMUSSNP5060935	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320507641	CHEV_2_131576175	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27272570					SNP	C	C	T	C	T	C	C	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467994	NES08991637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131592359 () rs orientation: forward

Symbol	Name	Function Class
Gm30986	predicted gene, 30986	1014 bp downstream
Rr565306	regulatory region 565306	within coordinates