rs27269735 SNP Detail

Summary

• ID
  rs27269735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133578837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCAGAT TCTAGCTGAA
  GACTAAGGAC CTGTTTCTTA AATATCAATC TGCTCTGTTT TTTGTTTCTC ACCAAAATGT
  CAAGATAGTG TTGAGTCCAT TTACTTTTTG CCTCCTATCC TCCTGGTGGA TAAGAGAGGT
  CAAGTCTACC AGGCTTCTCC TACTGGTGGA ATGAGTTGTT ACTCCTTACG CTATGTGAAG
  W
  GTCAATGTGG TTGACTTCCT ATGAACCAGA ATTTTCCATT GGGCTGAAGG AGGCTTCATT
  TTGTCTGAGA TCAGGGGTAG AGCAGAGTGC AGCAACAGGC CCTATGGCAT GGACACCTTA
  AGCTCAGGGG TTCCTAGGAA ATAAAAGTAG TGTTGACTCT TCAATGTGAT TCTTTTCTAA
  GCCTCTCTCT TCAACCTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37460165	NES08978524	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		A	A	T		A	A	A	A
ss45246910	mCV27569868	ABI	CRAMUS_MOUSE	f	SNP	T	T						A	A
ss147627208	ENSMUSSNP4296012	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
ss320511726	CHEV_2_133562653	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27269735					SNP	T	T	A	T	A	T	A	A	A	A	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460165	NES08978524	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133578837 () rs orientation: forward

Symbol	Name	Function Class
Rr565635	regulatory region 565635	1792 bp proximal