rs27269730 SNP Detail

Summary

• ID
  rs27269730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133581488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGACAGG GCAACTAATA TAAGGCATAT GTGTTGATAG
  TTCCATGAAC CGGAGCACTT GAGTGTGGCT TTACACCCTA TGATAACCAT CTTGATGTCT
  R
  CTCCTTTTTT TGTTGAAGCA ACAGAAGTAG TATGTCCTTC TGCAACCTGA CAACTGAGCT
  AATTGATGCT TGTACCTGAC TCTTCTCTCC AGCTTCTTAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37460160	NES08978388	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27269730					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460160	NES08978388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133581488 () rs orientation: forward

Symbol	Name	Function Class
Rr565635	regulatory region 565635	within coordinates