rs27269725 SNP Detail

Summary

• ID
  rs27269725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133582485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATGTGC TCTATACAAA AGTAGAAAAT AAAAAGTAAA
  ATTAAAAGTT TTATCTTCAC TCTAAAGTGT TCAAGTGAAA GAATGGGAAT GCCATGGACC
  Y
  TGCATCCCCT CCTCCTCTTC TAGCTCCTCC TCTGCCTCCC CCTCTTCCTC TACCTCCTCC
  TCCTCTTCCT TCTCCTTTCA ATATTCAAGA TTAATGTTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37460155	NES08978354	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27269725					SNP	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460155	NES08978354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133582485 () rs orientation: forward

Symbol	Name	Function Class
Rr565635	regulatory region 565635	969 bp distal