rs27269709 SNP Detail

Summary

• ID
  rs27269709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133590691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCAAAA TTCATCTAGA
  GCAGTGCAGA GCACTTTTTT TCTCCACTGT GAGATTTTGC CTGACACAAG GGAAAGGAGA
  TCTCTTACAC TGACAGCTTT ACAGTACTGT ATAAAGTGCC GGGGTGATTA CATCATCCTT
  ACTCTCCCTC TAAACGCTTT AGAACTATTG TATGGGAGGA TTTATGGTCT GAGCACCAAT
  K
  CAGCAGCCTG GTTATCAGTC AAGGGTTGGA CACAAGTTGT TTTAATGAGA AATTAACAAT
  GCAGCACCGT AATCTTTTAG TGTGCTTCAA CTTAAATCGG TTACTATTTG TTAACTGTTG
  GCCCTAGTTT TGTATGGTAA TTTTTTTTCT GTTCTATAAA CTCAATGTTT ACTTTAGGTG
  ATCATTTTAT ATTACATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460139	NES08978181	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27269709					SNP	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460139	NES08978181	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133590691 () rs orientation: forward

Symbol	Name	Function Class
Gm39940	predicted gene, 39940	within coordinates
Rr565636	regulatory region 565636	within coordinates
Rr565637	regulatory region 565637	1547 bp proximal