rs27269708 SNP Detail

Summary

• ID
  rs27269708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133590878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCACC AATGCAGCAG
  CCTGGTTATC AGTCAAGGGT TGGACACAAG TTGTTTTAAT GAGAAATTAA CAATGCAGCA
  CCGTAATCTT TTAGTGTGCT TCAACTTAAA TCGGTTACTA TTTGTTAACT GTTGGCCCTA
  GTTTTGTATG GTAATTTTTT TTCTGTTCTA TAAACTCAAT GTTTACTTTA GGTGATCATT
  W
  TATATTACAT TTTGTATCTC TCTCTCTCTT TCTCTCTCTC TTATATGTAT GTATATATTT
  CTAAAGTAAT TTGTACATAC TATTAATTTG ACAAAATCAG TAATTATCTT TTCTGCTCTT
  GGGTTTTTAA TAGTTAACAC CTTTGGGGCA TTTTGAGAGG TTAGATGGGC CTCATAGGTA
  AGATATTTTA AATTCCATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37460138	NES08978183	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27269708					SNP	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460138	NES08978183	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133590878 () rs orientation: forward

Symbol	Name	Function Class
Gm39940	predicted gene, 39940	within coordinates
Rr565636	regulatory region 565636	138 bp distal
Rr565637	regulatory region 565637	1360 bp proximal