rs27269704 SNP Detail

Summary

• ID
  rs27269704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133592080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAAAAG TCCCAGTGAA
  CAATTCCTTC ATTGTCTCAT TCACATCTGG GTTAATGTTT CTTTCTTGGA GAGCTCTGTA
  CCACTCTGTG CTTTGCTTCT TGCCACAAGA TAGCAATGCC AATTTCCCTG TGTTTACTTG
  ACAGTCTGGA GGCTGATGCA TCAGTACTAG CCACAAATTA ATGGAATTCT TTCCAGCTTG
  Y
  GATGTTTGTG GATAGTCAAA CAATAAGCCA AAAATGCTGA ACTGTTTTGG CTGCTTCTGT
  CTTAATTATG TACTTTTCTC AGGGATGATG TAAACACAAT TACTAGTTGA AATGACCGTG
  ACATTTAAGA TATTTCAAGG AAATAGATGA AGCTTTTATG GATGGGTCCA CAGGTCAAGA
  AAAATGTTCA TTGTTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37460134	NES08978145	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27269704					SNP	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460134	NES08978145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133592080 () rs orientation: forward

Symbol	Name	Function Class
Gm39940	predicted gene, 39940	within coordinates
Rr565636	regulatory region 565636	1340 bp distal
Rr565637	regulatory region 565637	158 bp proximal