rs27269703 SNP Detail

Summary

• ID
  rs27269703
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133592822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTCCTT AGAAGTTTAG
  AGAAAGTCAA CTCTTTTGGC AGCCAGTAAA GACTCTTTGG AATAATAATT TTTCAATTCC
  TGGGTGTTAA CAATCCTCAT TGGTTTATTC TTTATTGTGT AACGTACTAA AATTCCCAGT
  GTATTTGTAG AATTGGGTTG ATCCTAAATT AATTTGACTC TCTGTTAATT TCTTTGAATA
  M
  GTCAAAACAC TTTTCAGTCT GGGCTAGCAC AACTCAGTTT GTGATTTTTG CTATAGAATA
  GTGGTCCACT GTTTGGCCTT TCTTTTAGAA TTGCCAATTA AAATTGGCCT GAATGGACCT
  TTCTATCTTG AGTTTATAGG TAGCATCCAG CAGCCCAACT TGGTATGTAA ATAAATTACT
  TAAGAGTGTA TTATCTTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37460133	NES08978146	PERLEGEN	MM_PANEL2	f	SNP	C	C	A		A	A		A
ss320511736	CHEV_2_133576638	CHEVERUD	SCREENING_POP	f	SNP				C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27269703					SNP	C	C	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460133	NES08978146	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133592822 () rs orientation: forward

Symbol	Name	Function Class
Gm39940	predicted gene, 39940	within coordinates
Rr565637	regulatory region 565637	292 bp distal