rs27265334 SNP Detail

Summary

• ID
  rs27265334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143333295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTGTCA CGTGGACATT
  TGCTTCTTTG AGCTCCCTAA AAGTAAGGAG AGATTCCTGT TTATTTCTGG CTTTTGGATT
  CCAACAAAAA TGCAGGTAGG TGATACCCTA TCATTACTGG CGAAAAATGA ATCAAATATT
  CTTTTAGGAC CAATGTCAAG CAACAGGAAA GAAATGGGAG GGCAAGCAGC ATGTTGAATC
  W
  CGAGTGTGGT CCTTGGAGAA TAACCAGTAC TAGGCTGATC TCATATGCTA AGACTGTGGT
  ACCATGGAAA GAAGGACTGG GAAAGACTCT TCCTATGGCT GGAGAGGTGG CTTAGCAGTA
  AAGTGCTCGC TGAGAAAACA TGAAGAACAA AGCTCAGATC CTCAGCACCC AAGTAAGTAC
  CAGGTGGGGG TGGTGACTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37484985	NES08949284	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27265334					SNP	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37484985	NES08949284	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143333295 () rs orientation: forward

Symbol	Name	Function Class
Rr566292	regulatory region 566292	248 bp distal