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rs27264346 SNP Detail
Summary
  • ID
    rs27264346
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:143822763 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCAAGAAAAT GGGGGCTTGG GTTTTGAAGA ACTCTTACAC
    AAAGGTGCTC AAAGCACCTA GGGTTTTGTT CAGAGATTCA AACCCTGACA CACAGTTAGC
    R
    TCAAAGAACA AAGGTTACCA AGGCTTGTTT TGAGTACACA CCTGGTGGCT TCAGCCTGAA
    AAAAAGGGTG AAGAGTTAAC TGTCTGGAGG ATGGGAAGG                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37482884 NES08934576 PERLEGEN MM_PANEL2 f SNP A G G G A G G A G A G G A G G
ss147776984 ENSMUSSNP2836492 ENSEMBL ENSEMBL_Sanger f SNP A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27264346 SNP A A G G G A G G A G A G G A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37482884 NES08934576 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143822763 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 1124 bp upstream
Rr566349 regulatory region 566349 within coordinates
Rr566350 regulatory region 566350 129 bp proximal
Rr566351 regulatory region 566351 1349 bp proximal
Rrbp1 ribosome binding protein 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory