rs27264346 SNP Detail

Summary

• ID
  rs27264346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143822763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGAAAAT GGGGGCTTGG GTTTTGAAGA ACTCTTACAC
  AAAGGTGCTC AAAGCACCTA GGGTTTTGTT CAGAGATTCA AACCCTGACA CACAGTTAGC
  R
  TCAAAGAACA AAGGTTACCA AGGCTTGTTT TGAGTACACA CCTGGTGGCT TCAGCCTGAA
  AAAAAGGGTG AAGAGTTAAC TGTCTGGAGG ATGGGAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482884	NES08934576	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	A	G	A	G	G	A	G	G
ss147776984	ENSMUSSNP2836492	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264346					SNP	A	A	G	G	G	A	G	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482884	NES08934576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143822763 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			1124 bp upstream
Rr566349	regulatory region 566349			within coordinates
Rr566350	regulatory region 566350			129 bp proximal
Rr566351	regulatory region 566351			1349 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant