rs27264345 SNP Detail

Summary

• ID
  rs27264345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143822766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCAGCTC ACAGTGAACT
  TGCTTCCCTG GGGGATCTAT TTACATTCTG TTTGGAGGTA GAAAGGGACA GAGGGACAGA
  GAAGAAGTGG GAAGAGGGCA AGAAAATGGG GGCTTGGGTT TTGAAGAACT CTTACACAAA
  GGTGCTCAAA GCACCTAGGG TTTTGTTCAG AGATTCAAAC CCTGACACAC AGTTAGCGTC
  R
  AAGAACAAAG GTTACCAAGG CTTGTTTTGA GTACACACCT GGTGGCTTCA GCCTGAAAAA
  AAGGGTGAAG AGTTAACTGT CTGGAGGATG GGAAGGGGTC TGAGGAGGAC TGCCGTGGCG
  GCCCTGTACT GCCATCTGCT GGCCACATGA CTTCTGCCAA GTCTAAGCTC TGGCTGTGTA
  AAGCAGGTAG AACTGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482883	NES08934578	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264345					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482883	NES08934578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143822766 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			1121 bp upstream
Rr566349	regulatory region 566349			within coordinates
Rr566350	regulatory region 566350			126 bp proximal
Rr566351	regulatory region 566351			1346 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant