rs27264343 SNP Detail

Summary

• ID
  rs27264343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143822980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGGCTT GTTTTGAGTA
  CACACCTGGT GGCTTCAGCC TGAAAAAAAG GGTGAAGAGT TAACTGTCTG GAGGATGGGA
  AGGGGTCTGA GGAGGACTGC CGTGGCGGCC CTGTACTGCC ATCTGCTGGC CACATGACTT
  CTGCCAAGTC TAAGCTCTGG CTGTGTAAAG CAGGTAGAAC TGGGCTGTGA GCAGCATAAA
  Y
  GCAAGAAATG CAACACCAAG CACCTGGACA GAGAGCCTGG CTACACAGCA TGGCTGCCAG
  GACGGGTGAA CAGGCGAAAG GTGAAAGAGG AAGGGAGCAA CTGCAGCCCA GCCAATGGTT
  TTAAAGAAAG AGCTCTGATC TGCTCTGTAC ACCCTGAATA GGTTTTCCTG GAAGCTCTGA
  TAACCCTTCT TTATCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482881	NES08934581	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264343					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482881	NES08934581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143822980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			907 bp upstream
Rr566349	regulatory region 566349			within coordinates
Rr566350	regulatory region 566350			67 bp distal
Rr566351	regulatory region 566351			1132 bp proximal
Rr566352	regulatory region 566352			1951 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant