About   Help   FAQ
rs27264343 SNP Detail
Summary
  • ID
    rs27264343
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:143822980 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCAAGGCTT GTTTTGAGTA
    CACACCTGGT GGCTTCAGCC TGAAAAAAAG GGTGAAGAGT TAACTGTCTG GAGGATGGGA
    AGGGGTCTGA GGAGGACTGC CGTGGCGGCC CTGTACTGCC ATCTGCTGGC CACATGACTT
    CTGCCAAGTC TAAGCTCTGG CTGTGTAAAG CAGGTAGAAC TGGGCTGTGA GCAGCATAAA
    Y
    GCAAGAAATG CAACACCAAG CACCTGGACA GAGAGCCTGG CTACACAGCA TGGCTGCCAG
    GACGGGTGAA CAGGCGAAAG GTGAAAGAGG AAGGGAGCAA CTGCAGCCCA GCCAATGGTT
    TTAAAGAAAG AGCTCTGATC TGCTCTGTAC ACCCTGAATA GGTTTTCCTG GAAGCTCTGA
    TAACCCTTCT TTATCTCTTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37482881 NES08934581 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27264343 SNP T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37482881 NES08934581 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143822980 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 907 bp upstream
Rr566349 regulatory region 566349 within coordinates
Rr566350 regulatory region 566350 67 bp distal
Rr566351 regulatory region 566351 1132 bp proximal
Rr566352 regulatory region 566352 1951 bp proximal
Rrbp1 ribosome binding protein 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory