rs27264338 SNP Detail

Summary

• ID
  rs27264338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143823190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACACCAA GCACCTGGAC
  AGAGAGCCTG GCTACACAGC ATGGCTGCCA GGACGGGTGA ACAGGCGAAA GGTGAAAGAG
  GAAGGGAGCA ACTGCAGCCC AGCCAATGGT TTTAAAGAAA GAGCTCTGAT CTGCTCTGTA
  CACCCTGAAT AGGTTTTCCT GGAAGCTCTG ATAACCCTTC TTTATCTCTT CTGTCTCATG
  Y
  CCCTGTCAAG TTACAGCTCT TTTTACACTG CATTTCCTAC TACACATCTG CCCGCTCTGT
  AAGTAGAATG GTGTCCTGCA ATGCCACACA CAGGAGCTCA GATACCTCCA CCAGCATCCA
  TCCACAGGTC ACCCCTAGCT TCAGGGCACA GAAGCATCTT TGACATTCAT CTTACCTCAG
  CTTACAAGCA CTTACCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482876	NES08934588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264338					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482876	NES08934588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143823190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			697 bp upstream
Rr566349	regulatory region 566349			within coordinates
Rr566350	regulatory region 566350			277 bp distal
Rr566351	regulatory region 566351			922 bp proximal
Rr566352	regulatory region 566352			1741 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			1894 bp downstream