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rs27264336 SNP Detail
Summary
  • ID
    rs27264336
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:143823654 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TACTAATACA AATAGAAAAA CTAGAGAAAT GTAAAAGGGT
    AAATGAAAGA TACAAAAAAA GTACCCACAA TCCTATCTCC CAGTGGGTCT GTTCTCCCAT
    R
    TAGACCATGA GAGACTCACA AAAAACCTAC TTCTTTCTGT TTTCTACATT TTGGAGGGTG
    GTGGGAATCT CTTGGCCATG ACATCATGGT CACCTGGCC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37482874 NES08934591 PERLEGEN MM_PANEL2 f SNP G A A A G A G G A G G A G G A
ss45311092 mCV22374133 ABI CRAMUS_MOUSE f SNP G A A G
ss147777024 ENSMUSSNP7026432 ENSEMBL ENSEMBL_Sanger f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27264336 SNP G G A A A G A A G G A G G A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37482874 NES08934591 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143823654 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 233 bp upstream
Rr566349 regulatory region 566349 231 bp distal
Rr566350 regulatory region 566350 741 bp distal
Rr566351 regulatory region 566351 458 bp proximal
Rr566352 regulatory region 566352 1277 bp proximal
Rr566353 regulatory region 566353 1876 bp proximal
Rrbp1 ribosome binding protein 1 Coding-Synonymous
Intron
Noncoding-Transcript-Variant
Tssr26572 transcription start site region 26572 1430 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory