rs27264334 SNP Detail

Summary

• ID
  rs27264334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143823820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTCTTGG CCATGACATC ATGGTCACCT GGCCCCAGAA
  TGATACCAGC CTACCAGCTG GGGAAGGAGA GGGTTTTCTT CAAAAAGCTA TCCACAGAGT
  R
  TGATAAAAGT ACCAGAGCCC CTGTCTCACT AAATAAAGAG GTTACGGGCT CTGTGGTAGA
  GTCCTCATCA GACCTGGGTC TCAACTCCTC TTCCTCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37482872	NES08934595	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G	A	G	A
ss147777034	ENSMUSSNP5583814	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27264334					SNP	G	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482872	NES08934595	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143823820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			67 bp upstream
Rr566349	regulatory region 566349			397 bp distal
Rr566350	regulatory region 566350			907 bp distal
Rr566351	regulatory region 566351			292 bp proximal
Rr566352	regulatory region 566352			1111 bp proximal
Rr566353	regulatory region 566353			1710 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			1264 bp downstream