rs27264331 SNP Detail

Summary

• ID
  rs27264331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143824068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGCTACCT GCGGGCCAGG GAACTACATA GTGTATTCCC
  ATATCCAGAC CCACATAGGA TCTAACCAAA GCCACTTCTA GTGCAGATGT CCTGACAGCA
  Y
  GTCACCAAGA GGCCATTCCA AGGAATCGGA GCAGCCAGGG ATAAAGACGG ATTTTAAAAA
  CCACCACCAC ACATGCACAC GCTCCCTGAG CTTCCTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37482869	NES08934600	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	T	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27264331					SNP	T	C	C	C	T	C	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482869	NES08934600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143824068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			within coordinates
Rr566349	regulatory region 566349			645 bp distal
Rr566350	regulatory region 566350			1155 bp distal
Rr566351	regulatory region 566351			44 bp proximal
Rr566352	regulatory region 566352			863 bp proximal
Rr566353	regulatory region 566353			1462 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			1016 bp downstream