CATGCTACCT GCGGGCCAGG GAACTACATA GTGTATTCCC ATATCCAGAC CCACATAGGA TCTAACCAAA GCCACTTCTA GTGCAGATGT CCTGACAGCA Y GTCACCAAGA GGCCATTCCA AGGAATCGGA GCAGCCAGGG ATAAAGACGG ATTTTAAAAA CCACCACCAC ACATGCACAC GCTCCCTGAG CTTCCTCAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37482869 | NES08934600 | PERLEGEN | MM_PANEL2 | f | SNP | T | C | C | C | T | C | T | T | C | T | T | C | T | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
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rs27264331 | SNP | T | C | C | C | T | C | T | T | C | T | T | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37482869 | NES08934600 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:143824068 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr373991 | regulatory region 373991 | within coordinates | ||||||
Rr566349 | regulatory region 566349 | 645 bp distal | ||||||
Rr566350 | regulatory region 566350 | 1155 bp distal | ||||||
Rr566351 | regulatory region 566351 | 44 bp proximal | ||||||
Rr566352 | regulatory region 566352 | 863 bp proximal | ||||||
Rr566353 | regulatory region 566353 | 1462 bp proximal | ||||||
Rrbp1 | ribosome binding protein 1 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Tssr26572 | transcription start site region 26572 | 1016 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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