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rs27264330 SNP Detail
Summary
  • ID
    rs27264330
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:143824096 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGTCTCAAC TCCTCTTCCT
    CTGAGCAAGA AACAGGCCTC ACTCCGATTA ACAGCTGCCT CATTGTAGAC CTCATGCTAC
    CTGCGGGCCA GGGAACTACA TAGTGTATTC CCATATCCAG ACCCACATAG GATCTAACCA
    AAGCCACTTC TAGTGCAGAT GTCCTGACAG CACGTCACCA AGAGGCCATT CCAAGGAATC
    R
    GAGCAGCCAG GGATAAAGAC GGATTTTAAA AACCACCACC ACACATGCAC ACGCTCCCTG
    AGCTTCCTCA AGGATCCTGG GCACAGCTAC TGAGGCAGCA GTGGTACTCC AAACACTTTA
    GTTCAGAGGA GTGTTCACTT CAAGGATTCT ACTCATTCCC AGTCCCTAAG CACTCAGTAA
    AGAACCCCTG CTTTCTACTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37482868 NES08934602 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27264330 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37482868 NES08934602 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143824096 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 within coordinates
Rr566349 regulatory region 566349 673 bp distal
Rr566350 regulatory region 566350 1183 bp distal
Rr566351 regulatory region 566351 16 bp proximal
Rr566352 regulatory region 566352 835 bp proximal
Rr566353 regulatory region 566353 1434 bp proximal
Rrbp1 ribosome binding protein 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Tssr26572 transcription start site region 26572 988 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory