rs27264328 SNP Detail

Summary

• ID
  rs27264328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143824291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCAGTGG TACTCCAAAC ACTTTAGTTC AGAGGAGTGT
  TCACTTCAAG GATTCTACTC ATTCCCAGTC CCTAAGCACT CAGTAAAGAA CCCCTGCTTT
  Y
  TACTTCACAG GCCAGTGTTT CCTCCTCCTT CCACACGAGA GCTTGTAACA CTCCTTTGCA
  ATACAAACCC TTCTCAGCTC AATGGTAGAA CCACATGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482866	NES08934606	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	T	C	T	C	T	T	C
ss45266933	mCV22374146	ABI	CRAMUS_MOUSE	f	SNP		T	C						T
ss147777050	ENSMUSSNP2503939	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264328					SNP	T	T	C	C	C	T	C	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482866	NES08934606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143824291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			within coordinates
Rr566349	regulatory region 566349			868 bp distal
Rr566350	regulatory region 566350			1378 bp distal
Rr566351	regulatory region 566351			within coordinates
Rr566352	regulatory region 566352			640 bp proximal
Rr566353	regulatory region 566353			1239 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			793 bp downstream