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rs27264327 SNP Detail
Summary
  • ID
    rs27264327
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:143824328 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGTTCACTTC AAGGATTCTA CTCATTCCCA GTCCCTAAGC
    ACTCAGTAAA GAACCCCTGC TTTCTACTTC ACAGGCCAGT GTTTCCTCCT CCTTCCACAC
    R
    AGAGCTTGTA ACACTCCTTT GCAATACAAA CCCTTCTCAG CTCAATGGTA GAACCACATG
    AGCAGGGGTT GGCTCTGAAA CAATCAAGCA GGCCTCTGT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37482865 NES08934608 PERLEGEN MM_PANEL2 f SNP A G G G A G A A G A A G A A G
ss147777053 ENSMUSSNP2007230 ENSEMBL ENSEMBL_Sanger f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27264327 SNP A G G G A G A A G A A G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37482865 NES08934608 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143824328 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 within coordinates
Rr566349 regulatory region 566349 905 bp distal
Rr566350 regulatory region 566350 1415 bp distal
Rr566351 regulatory region 566351 within coordinates
Rr566352 regulatory region 566352 603 bp proximal
Rr566353 regulatory region 566353 1202 bp proximal
Rrbp1 ribosome binding protein 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Tssr26572 transcription start site region 26572 756 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory