rs27264326 SNP Detail

Summary

• ID
  rs27264326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143825102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAGGAA TCATGTGTTC
  ATTGTCACAC ACTGCCACAG ACAAGCAGTA AAACCCATGG CATGGCCCCA ATCAGCCTCT
  GAAAGAGCTC CAGCTGGCCT ACAGAAACGT GCCCAGGCCT GCCTCCATAC CTCCCACATC
  TCCTCTGTGG TACCTGTCAT CAAAGCCTTG CACCAGCCAG GGACAGAGTG AGCCTGGTGA
  Y
  GTGACCCCAG TTGTATCCTG GGCTGCTTCT GCACTGTGAT GTCATTAGTG CCTTGCTATT
  TGAGGGACAG TGACAACTAG AACCAAGAAG GGGAGTAACT GTATGATACC AACATATGGC
  TAGAAGCCAG ATCTTCTTCA TAGGAATACC TGCAAGGTGA CCCAAGAGGC CACCTCCCTC
  CAAATGGCTG TTTAGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37482864	NES08934524	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	C	C	C	C	C	C	C	C
ss147777070	ENSMUSSNP6783545	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27264326					SNP	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37482864	NES08934524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143825102 () rs orientation: forward

Symbol	Name	Function Class
Rr373991	regulatory region 373991	within coordinates
Rr566349	regulatory region 566349	1679 bp distal
Rr566351	regulatory region 566351	687 bp distal
Rr566352	regulatory region 566352	60 bp distal
Rr566353	regulatory region 566353	428 bp proximal
Rrbp1	ribosome binding protein 1	Intron
Tssr26572	transcription start site region 26572	10 bp upstream