rs27261917 SNP Detail

Summary

• ID
  rs27261917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148715641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCAATT TAAGAATAGC
  ACTTATCCCT CTCCCCATAA TGGGGCACAC CAGATCAACT TGTCAGAAAT GGGAAGCACA
  AACTGAGGGA CATAGGTCGG GGTGGAGGGG TACAGGGCTC TGTGTATTGA TTGCCCCGCA
  GGACCAAAAA CAGCTCTGGA TTTGGGAGAA TGTCCTGATT TTCCTACTAG TTAAAGGAGA
  M
  CTGCAGACCA AAGAACCTAC AACTCCTTAT ACTTTGCTCC ATCTGTTGCC ACAATTAAGA
  GGTGCACTGG CCCTCAAGGT CCAAGGCAGC TGGGAAGTGG AGTTTTCTCA AGGTTGATCC
  CAGCAGCAGG AGAAAAAAAT GGAGCAGGAT TTAACTCGTT TGTATTTTCA AGAGAAGGTA
  GAAATGAGCT CTACACACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489837	NES08920661	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261917					SNP	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489837	NES08920661	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148715641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			411 bp upstream
Rr566976	regulatory region 566976			1811 bp proximal
Rr566977	regulatory region 566977			1845 bp proximal
Tssr20679	transcription start site region 20679			1989 bp downstream
Tssr20680	transcription start site region 20680			1727 bp downstream
Tssr20681	transcription start site region 20681			830 bp downstream
Tssr20682	transcription start site region 20682			1427 bp upstream
Tssr20683	transcription start site region 20683			1503 bp upstream
Tssr26682	transcription start site region 26682			1761 bp upstream
Tssr26683	transcription start site region 26683			1711 bp upstream
Tssr26684	transcription start site region 26684			1674 bp upstream
Tssr26685	transcription start site region 26685			815 bp upstream
Tssr26686	transcription start site region 26686			782 bp upstream
Tssr26687	transcription start site region 26687			651 bp upstream
Tssr26688	transcription start site region 26688			1700 bp downstream
Tssr26689	transcription start site region 26689			1731 bp downstream
Tssr26690	transcription start site region 26690			1883 bp downstream
Tssr26691	transcription start site region 26691			1902 bp downstream