rs27261915 SNP Detail

Summary

• ID
  rs27261915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGAGAC CAGCAAACTG
  AGACTTTGAG TGAAGGACCT GAGTGTTCGT GGGTTCCCAA TTTTCCAAAT GGAATCTTGG
  GTATGTAGAG AATGCCCTTG TTTTCCGGAA GTGTTGACTC TGAAAGTATA CACAAAAATA
  AGTGACTATA AACACACACC CACGTACACG TGCTCCTGAG TAGAGCAAGG AGATTGGAAC
  R
  TGGCCAAGTG TTTACTGGAA GGATGGGGTG AAATCTGCCG TCTGTCAGAA TGAGTTTCAA
  GTAGCGCGAT TAAGTGAAGC CAGATCATTA GCAGTTGACA TTGACCCCAG GCGGCTAAGG
  GAGGTGAGCT CCGCCCAGGG AGCGTTTGAC CTACATCCTT AGTACCTTCT CTGGGTGGCC
  TTTTGGAAAC AGAGCTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489835	NES08920663	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261915					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489835	NES08920663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716655 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			797 bp proximal
Rr566977	regulatory region 566977			831 bp proximal
Tssr20681	transcription start site region 20681			1844 bp downstream
Tssr20682	transcription start site region 20682			413 bp upstream
Tssr20683	transcription start site region 20683			489 bp upstream
Tssr26685	transcription start site region 26685			1829 bp upstream
Tssr26686	transcription start site region 26686			1796 bp upstream
Tssr26687	transcription start site region 26687			1665 bp upstream
Tssr26688	transcription start site region 26688			686 bp downstream
Tssr26689	transcription start site region 26689			717 bp downstream
Tssr26690	transcription start site region 26690			869 bp downstream
Tssr26691	transcription start site region 26691			888 bp downstream