rs27261914 SNP Detail

Summary

• ID
  rs27261914
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGAGAC TTTGAGTGAA
  GGACCTGAGT GTTCGTGGGT TCCCAATTTT CCAAATGGAA TCTTGGGTAT GTAGAGAATG
  CCCTTGTTTT CCGGAAGTGT TGACTCTGAA AGTATACACA AAAATAAGTG ACTATAAACA
  CACACCCACG TACACGTGCT CCTGAGTAGA GCAAGGAGAT TGGAACATGG CCAAGTGTTT
  W
  CTGGAAGGAT GGGGTGAAAT CTGCCGTCTG TCAGAATGAG TTTCAAGTAG CGCGATTAAG
  TGAAGCCAGA TCATTAGCAG TTGACATTGA CCCCAGGCGG CTAAGGGAGG TGAGCTCCGC
  CCAGGGAGCG TTTGACCTAC ATCCTTAGTA CCTTCTCTGG GTGGCCTTTT GGAAACAGAG
  CTAGGAGGCC CACCCGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489834	NES08920664	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261914					SNP	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489834	NES08920664	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			783 bp proximal
Rr566977	regulatory region 566977			817 bp proximal
Tssr20681	transcription start site region 20681			1858 bp downstream
Tssr20682	transcription start site region 20682			399 bp upstream
Tssr20683	transcription start site region 20683			475 bp upstream
Tssr26685	transcription start site region 26685			1843 bp upstream
Tssr26686	transcription start site region 26686			1810 bp upstream
Tssr26687	transcription start site region 26687			1679 bp upstream
Tssr26688	transcription start site region 26688			672 bp downstream
Tssr26689	transcription start site region 26689			703 bp downstream
Tssr26690	transcription start site region 26690			855 bp downstream
Tssr26691	transcription start site region 26691			874 bp downstream