rs27261913 SNP Detail

Summary

• ID
  rs27261913
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGAGTAG AGCAAGGAGA TTGGAACATG GCCAAGTGTT
  TACTGGAAGG ATGGGGTGAA ATCTGCCGTC TGTCAGAATG AGTTTCAAGT AGCGCGATTA
  M
  GTGAAGCCAG ATCATTAGCA GTTGACATTG ACCCCAGGCG GCTAAGGGAG GTGAGCTCCG
  CCCAGGGAGC GTTTGACCTA CATCCTTAGT ACCTTCTCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489833	NES08920665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261913					SNP	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489833	NES08920665	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716728 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			724 bp proximal
Rr566977	regulatory region 566977			758 bp proximal
Tssr20681	transcription start site region 20681			1917 bp downstream
Tssr20682	transcription start site region 20682			340 bp upstream
Tssr20683	transcription start site region 20683			416 bp upstream
Tssr26685	transcription start site region 26685			1902 bp upstream
Tssr26686	transcription start site region 26686			1869 bp upstream
Tssr26687	transcription start site region 26687			1738 bp upstream
Tssr26688	transcription start site region 26688			613 bp downstream
Tssr26689	transcription start site region 26689			644 bp downstream
Tssr26690	transcription start site region 26690			796 bp downstream
Tssr26691	transcription start site region 26691			815 bp downstream