rs27261910 SNP Detail

Summary

• ID
  rs27261910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTTCTG AGTTCCAGAA
  TAAACAAAAG ATGAATGTTA ACACAATGAG TAGACCAGAG AAGAAAGGAA GAGAGAGGAC
  CGCTCCCATA AGAAGCAAAG GTGTTGATTA ACAACTGCAG ATGCAAACCG CGCCCTAGCT
  AGGGGTGCCT GGGTGGGAGC GGCCTGGAGA CGTCGGGAGA GCAGGGGACA GCAGGGACAC
  R
  TACCTGCTTA CGAGCTCTCA CCACCTGTAT GGCGCGGCTG TGGTACGCAT CGTTGCTGCC
  CTTGTTGTAC TCGCTCACAG CGAAGTCCAA CGCTCGCCGC ACGCCTTCCT CATTGGCATC
  TGCCTCCTCC GGGGCTCCCA ACATTCGCGG GCCTTGTTTT GGGGTCGCCG CCCAGGCCAC
  GGCCAGGACG GCCAGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489830	NES08920668	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261910					SNP	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489830	NES08920668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			383 bp proximal
Rr566977	regulatory region 566977			417 bp proximal
Rr566978	regulatory region 566978			1930 bp proximal
Tssr20682	transcription start site region 20682			within coordinates
Tssr20683	transcription start site region 20683			75 bp upstream
Tssr26688	transcription start site region 26688			272 bp downstream
Tssr26689	transcription start site region 26689			303 bp downstream
Tssr26690	transcription start site region 26690			455 bp downstream
Tssr26691	transcription start site region 26691			474 bp downstream