rs27261909 SNP Detail

Summary

• ID
  rs27261909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGTGGG AGCGGCCTGG AGACGTCGGG AGAGCAGGGG
  ACAGCAGGGA CACGTACCTG CTTACGAGCT CTCACCACCT GTATGGCGCG GCTGTGGTAC
  R
  CATCGTTGCT GCCCTTGTTG TACTCGCTCA CAGCGAAGTC CAACGCTCGC CGCACGCCTT
  CCTCATTGGC ATCTGCCTCC TCCGGGGCTC CCAACATTCG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489829	NES08920669	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261909					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489829	NES08920669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			336 bp proximal
Rr566977	regulatory region 566977			370 bp proximal
Rr566978	regulatory region 566978			1883 bp proximal
Tssr20682	transcription start site region 20682			25 bp downstream
Tssr20683	transcription start site region 20683			28 bp upstream
Tssr26688	transcription start site region 26688			225 bp downstream
Tssr26689	transcription start site region 26689			256 bp downstream
Tssr26690	transcription start site region 26690			408 bp downstream
Tssr26691	transcription start site region 26691			427 bp downstream