rs27261908 SNP Detail

Summary

• ID
  rs27261908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTGGGA GCGGCCTGGA
  GACGTCGGGA GAGCAGGGGA CAGCAGGGAC ACGTACCTGC TTACGAGCTC TCACCACCTG
  TATGGCGCGG CTGTGGTACG CATCGTTGCT GCCCTTGTTG TACTCGCTCA CAGCGAAGTC
  CAACGCTCGC CGCACGCCTT CCTCATTGGC ATCTGCCTCC TCCGGGGCTC CCAACATTCG
  Y
  GGGCCTTGTT TTGGGGTCGC CGCCCAGGCC ACGGCCAGGA CGGCCAGCAG GAACAGCAAG
  GAGCGCAGCG GGCTGGCCAT GGTTGGCTAG GACAAAGGGA TAAAGCTCCA ACAAGACTCT
  GAGTTGGTGC AGAACAGACG CTGCTACTCC GTGCGACTTT TACCCAAATG CGAGCGTTAG
  GGACCCGCCC GCCTCTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss37489828	NES08920670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs27261908					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489828	NES08920670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			235 bp proximal
Rr566977	regulatory region 566977			269 bp proximal
Rr566978	regulatory region 566978			1782 bp proximal
Tssr20682	transcription start site region 20682			126 bp downstream
Tssr20683	transcription start site region 20683			41 bp downstream
Tssr26688	transcription start site region 26688			124 bp downstream
Tssr26689	transcription start site region 26689			155 bp downstream
Tssr26690	transcription start site region 26690			307 bp downstream
Tssr26691	transcription start site region 26691			326 bp downstream