rs27261907 SNP Detail

Summary

• ID
  rs27261907
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT AATTTCCTGC ATCTTCAAAG
  K
  TCAGCCTCGA TCACTTGATG GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37489827	NES08920671	PERLEGEN	MM_PANEL2	f	SNP	T	G		T		G
ss320557236	CHEV_2_148701656	CHEVERUD	SCREENING_POP	f	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27261907					SNP	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489827	NES08920671	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717840 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	408 bp upstream
Rr374041	regulatory region 374041	within coordinates
Rr566976	regulatory region 566976	367 bp distal
Rr566977	regulatory region 566977	within coordinates
Rr566978	regulatory region 566978	1159 bp proximal
Tssr20682	transcription start site region 20682	749 bp downstream
Tssr20683	transcription start site region 20683	664 bp downstream
Tssr26688	transcription start site region 26688	476 bp upstream
Tssr26689	transcription start site region 26689	432 bp upstream
Tssr26690	transcription start site region 26690	304 bp upstream
Tssr26691	transcription start site region 26691	279 bp upstream