rs27261906 SNP Detail

Summary

• ID
  rs27261906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148718176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTGCAG CATTCTGTGT
  AACTACTCAT TATCCTTAAA GAAACCATCC TAGGCTTCTT CCTAGACCAG GCCACTCTAG
  GGCCTGGAGA TACCACAGGA GGCCAAGCCC CGAATGGATA TTGTAACAGG CTGCCCAGTA
  TATCCATCTA AGATGAACCC ATGTGTCTTT TATGCTTCCT AGTAGACAGG TTAAAAACTA
  Y
  GGTATGAGGC TGGGTATGAT GGCGCATGTA TTTAATTCCA GTACATGGAA GGCAGAAGTA
  GGTAGATCTG TGTTCAAGAC CAGCTTGGTC TACATCTCTG GTTCCAGGCC AGCAAGGGCT
  ACACAGTGAA ATCTTAGAAG AAAAAGAAGA AGGAGGAGGA GGGGGAGGGG GAGAGGGAGA
  GGGAGGGGGA GAGGGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37489826	NES08920672	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27261906					SNP	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489826	NES08920672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148718176 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	744 bp upstream
Rr374041	regulatory region 374041	49 bp downstream
Rr566976	regulatory region 566976	703 bp distal
Rr566977	regulatory region 566977	190 bp distal
Rr566978	regulatory region 566978	823 bp proximal
Tssr20682	transcription start site region 20682	1085 bp downstream
Tssr20683	transcription start site region 20683	1000 bp downstream
Tssr26688	transcription start site region 26688	812 bp upstream
Tssr26689	transcription start site region 26689	768 bp upstream
Tssr26690	transcription start site region 26690	640 bp upstream
Tssr26691	transcription start site region 26691	615 bp upstream